606 lines
20 KiB
MySQL
606 lines
20 KiB
MySQL
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-- ------------------------------------------------------------------
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-- Reference CREATE TABLE schemas for every derived table produced by
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-- sql/build_sapsii.sql
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-- sql/build_sepsis3.sql
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--
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-- This file is documentation only. The actual build scripts use
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-- `DROP TABLE IF EXISTS ...; CREATE TABLE ... AS SELECT ...`, so
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-- column types are inferred by PostgreSQL at build time from the
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-- MIMIC-III v1.3 base schema and from the expressions in the SELECT.
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-- The types below match what PostgreSQL infers when the build is run
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-- on a stock MIMIC-III v1.3 PostgreSQL restore (where for example
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-- chartevents.valuenum is DOUBLE PRECISION, outputevents.value is
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-- DOUBLE PRECISION, *.charttime is TIMESTAMP(0), etc.).
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--
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-- Use this file as:
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-- * a quick reference for column names and types of each derived
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-- table (handy for downstream consumers that need to know the
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-- output schema without grep'ing through the build SQL);
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-- * a stub for declaring empty derived tables ahead of time (e.g.
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-- in a migration that just `CREATE TABLE IF NOT EXISTS ...`s
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-- them, then later runs the build to populate them);
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-- * a checklist when porting these scripts to another flavor of
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-- MIMIC (e.g. MIMIC-III v1.4 or MIMIC-IV).
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-- ------------------------------------------------------------------
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-- ==================================================================
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-- SAPS-II
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-- ==================================================================
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-- 1. Helper: all-time urine output (from outputevents).
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DROP TABLE IF EXISTS urine_output;
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CREATE TABLE urine_output (
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icustay_id INTEGER,
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charttime TIMESTAMP(0),
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value DOUBLE PRECISION
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);
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-- 2. Ventilation: classification (per charttime) and durations
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-- (per ventilation episode).
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DROP TABLE IF EXISTS ventilation_classification;
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CREATE TABLE ventilation_classification (
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icustay_id INTEGER,
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charttime TIMESTAMP(0),
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mechvent INTEGER,
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oxygentherapy INTEGER,
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extubated INTEGER,
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selfextubated INTEGER
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);
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DROP TABLE IF EXISTS ventilation_durations;
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CREATE TABLE ventilation_durations (
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icustay_id INTEGER,
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ventnum BIGINT,
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starttime TIMESTAMP(0),
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endtime TIMESTAMP(0),
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duration_hours NUMERIC
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);
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-- 3. First-day pivots feeding SAPS-II.
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DROP TABLE IF EXISTS blood_gas_first_day;
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CREATE TABLE blood_gas_first_day (
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subject_id INTEGER,
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hadm_id INTEGER,
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icustay_id INTEGER,
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charttime TIMESTAMP(0),
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specimen VARCHAR(200),
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aado2 DOUBLE PRECISION,
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baseexcess DOUBLE PRECISION,
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bicarbonate DOUBLE PRECISION,
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totalco2 DOUBLE PRECISION,
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carboxyhemoglobin DOUBLE PRECISION,
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chloride DOUBLE PRECISION,
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calcium DOUBLE PRECISION,
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glucose DOUBLE PRECISION,
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hematocrit DOUBLE PRECISION,
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hemoglobin DOUBLE PRECISION,
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intubated DOUBLE PRECISION,
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lactate DOUBLE PRECISION,
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methemoglobin DOUBLE PRECISION,
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o2flow DOUBLE PRECISION,
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fio2 DOUBLE PRECISION,
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so2 DOUBLE PRECISION,
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pco2 DOUBLE PRECISION,
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peep DOUBLE PRECISION,
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ph DOUBLE PRECISION,
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po2 DOUBLE PRECISION,
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potassium DOUBLE PRECISION,
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requiredo2 DOUBLE PRECISION,
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sodium DOUBLE PRECISION,
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temperature DOUBLE PRECISION,
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tidalvolume DOUBLE PRECISION,
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ventilationrate DOUBLE PRECISION,
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ventilator DOUBLE PRECISION
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);
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DROP TABLE IF EXISTS blood_gas_first_day_arterial;
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CREATE TABLE blood_gas_first_day_arterial (
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subject_id INTEGER,
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hadm_id INTEGER,
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icustay_id INTEGER,
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charttime TIMESTAMP(0),
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specimen VARCHAR(200),
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specimen_pred VARCHAR(200),
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specimen_prob DOUBLE PRECISION,
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so2 DOUBLE PRECISION,
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spo2 DOUBLE PRECISION,
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po2 DOUBLE PRECISION,
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pco2 DOUBLE PRECISION,
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fio2_chartevents DOUBLE PRECISION,
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fio2 DOUBLE PRECISION,
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aado2 DOUBLE PRECISION,
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aado2_calc DOUBLE PRECISION,
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pao2fio2 DOUBLE PRECISION,
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ph DOUBLE PRECISION,
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baseexcess DOUBLE PRECISION,
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bicarbonate DOUBLE PRECISION,
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totalco2 DOUBLE PRECISION,
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hematocrit DOUBLE PRECISION,
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hemoglobin DOUBLE PRECISION,
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carboxyhemoglobin DOUBLE PRECISION,
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methemoglobin DOUBLE PRECISION,
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chloride DOUBLE PRECISION,
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calcium DOUBLE PRECISION,
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temperature DOUBLE PRECISION,
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potassium DOUBLE PRECISION,
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sodium DOUBLE PRECISION,
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lactate DOUBLE PRECISION,
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glucose DOUBLE PRECISION,
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intubated DOUBLE PRECISION,
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tidalvolume DOUBLE PRECISION,
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ventilationrate DOUBLE PRECISION,
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ventilator DOUBLE PRECISION,
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peep DOUBLE PRECISION,
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o2flow DOUBLE PRECISION,
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requiredo2 DOUBLE PRECISION
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);
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DROP TABLE IF EXISTS gcs_first_day;
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CREATE TABLE gcs_first_day (
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subject_id INTEGER,
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hadm_id INTEGER,
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icustay_id INTEGER,
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mingcs DOUBLE PRECISION,
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gcsmotor DOUBLE PRECISION,
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gcsverbal DOUBLE PRECISION,
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gcseyes DOUBLE PRECISION,
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endotrachflag INTEGER
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);
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DROP TABLE IF EXISTS labs_first_day;
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CREATE TABLE labs_first_day (
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subject_id INTEGER,
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hadm_id INTEGER,
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icustay_id INTEGER,
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aniongap_min DOUBLE PRECISION,
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aniongap_max DOUBLE PRECISION,
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albumin_min DOUBLE PRECISION,
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albumin_max DOUBLE PRECISION,
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bands_min DOUBLE PRECISION,
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bands_max DOUBLE PRECISION,
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bicarbonate_min DOUBLE PRECISION,
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bicarbonate_max DOUBLE PRECISION,
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bilirubin_min DOUBLE PRECISION,
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bilirubin_max DOUBLE PRECISION,
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creatinine_min DOUBLE PRECISION,
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creatinine_max DOUBLE PRECISION,
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chloride_min DOUBLE PRECISION,
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chloride_max DOUBLE PRECISION,
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glucose_min DOUBLE PRECISION,
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glucose_max DOUBLE PRECISION,
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hematocrit_min DOUBLE PRECISION,
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hematocrit_max DOUBLE PRECISION,
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hemoglobin_min DOUBLE PRECISION,
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hemoglobin_max DOUBLE PRECISION,
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lactate_min DOUBLE PRECISION,
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lactate_max DOUBLE PRECISION,
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platelet_min DOUBLE PRECISION,
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platelet_max DOUBLE PRECISION,
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potassium_min DOUBLE PRECISION,
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potassium_max DOUBLE PRECISION,
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ptt_min DOUBLE PRECISION,
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ptt_max DOUBLE PRECISION,
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inr_min DOUBLE PRECISION,
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inr_max DOUBLE PRECISION,
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pt_min DOUBLE PRECISION,
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pt_max DOUBLE PRECISION,
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sodium_min DOUBLE PRECISION,
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sodium_max DOUBLE PRECISION,
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bun_min DOUBLE PRECISION,
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bun_max DOUBLE PRECISION,
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wbc_min DOUBLE PRECISION,
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wbc_max DOUBLE PRECISION
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);
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DROP TABLE IF EXISTS urine_output_first_day;
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CREATE TABLE urine_output_first_day (
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subject_id INTEGER,
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hadm_id INTEGER,
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icustay_id INTEGER,
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urineoutput DOUBLE PRECISION
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);
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DROP TABLE IF EXISTS vitals_first_day;
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CREATE TABLE vitals_first_day (
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subject_id INTEGER,
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hadm_id INTEGER,
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icustay_id INTEGER,
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heartrate_min DOUBLE PRECISION,
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heartrate_max DOUBLE PRECISION,
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heartrate_mean DOUBLE PRECISION,
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sysbp_min DOUBLE PRECISION,
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sysbp_max DOUBLE PRECISION,
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sysbp_mean DOUBLE PRECISION,
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diasbp_min DOUBLE PRECISION,
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diasbp_max DOUBLE PRECISION,
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diasbp_mean DOUBLE PRECISION,
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meanbp_min DOUBLE PRECISION,
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meanbp_max DOUBLE PRECISION,
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meanbp_mean DOUBLE PRECISION,
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resprate_min DOUBLE PRECISION,
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resprate_max DOUBLE PRECISION,
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resprate_mean DOUBLE PRECISION,
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tempc_min DOUBLE PRECISION,
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tempc_max DOUBLE PRECISION,
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tempc_mean DOUBLE PRECISION,
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spo2_min DOUBLE PRECISION,
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spo2_max DOUBLE PRECISION,
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spo2_mean DOUBLE PRECISION,
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glucose_min DOUBLE PRECISION,
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glucose_max DOUBLE PRECISION,
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glucose_mean DOUBLE PRECISION
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);
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-- 4. Final SAPS-II score table (one row per ICU stay).
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DROP TABLE IF EXISTS sapsii;
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CREATE TABLE sapsii (
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subject_id INTEGER,
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hadm_id INTEGER,
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icustay_id INTEGER,
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sapsii INTEGER,
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sapsii_prob DOUBLE PRECISION,
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age_score INTEGER,
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hr_score INTEGER,
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sysbp_score INTEGER,
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temp_score INTEGER,
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pao2fio2_score INTEGER,
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uo_score INTEGER,
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bun_score INTEGER,
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wbc_score INTEGER,
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potassium_score INTEGER,
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sodium_score INTEGER,
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bicarbonate_score INTEGER,
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bilirubin_score INTEGER,
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gcs_score INTEGER,
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comorbidity_score INTEGER,
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admissiontype_score INTEGER
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);
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-- ==================================================================
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-- Sepsis-3
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-- ==================================================================
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--
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-- Sepsis-3 reuses these SAPS-II tables:
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-- urine_output, ventilation_classification, ventilation_durations
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-- (defined above). The tables below are the ones added by
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-- build_sepsis3.sql.
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-- 1. Echo extraction (used to impute weight when chartevents weight
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-- is missing; also keyed by ROW_ID to the noteevents row).
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DROP TABLE IF EXISTS echo_data;
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CREATE TABLE echo_data (
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row_id INTEGER,
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subject_id INTEGER,
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hadm_id INTEGER,
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chartdate TIMESTAMP(0),
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charttime TIMESTAMP(3),
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indication TEXT,
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height NUMERIC,
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weight NUMERIC,
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bsa NUMERIC,
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bp TEXT,
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bpsys NUMERIC,
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bpdias NUMERIC,
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hr NUMERIC,
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status TEXT,
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test TEXT,
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doppler TEXT,
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contrast TEXT,
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technicalquality TEXT
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);
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-- 2. Per-stay weight durations (admit + daily + neonate + echo
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-- imputed); used for mcg/kg/min vasopressor unit conversion.
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DROP TABLE IF EXISTS weight_durations;
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CREATE TABLE weight_durations (
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icustay_id INTEGER,
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starttime TIMESTAMP(0),
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endtime TIMESTAMP(0),
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weight DOUBLE PRECISION
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);
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-- 3. Vasopressor dose tables. All four have the same schema; rates
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-- are merged CareVue + MetaVision and converted to mcg/kg/min.
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DROP TABLE IF EXISTS dobutamine_dose;
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CREATE TABLE dobutamine_dose (
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icustay_id INTEGER,
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starttime TIMESTAMP(0),
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endtime TIMESTAMP(0),
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vaso_rate DOUBLE PRECISION,
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vaso_amount DOUBLE PRECISION
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);
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DROP TABLE IF EXISTS dopamine_dose;
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CREATE TABLE dopamine_dose (
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icustay_id INTEGER,
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starttime TIMESTAMP(0),
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endtime TIMESTAMP(0),
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vaso_rate DOUBLE PRECISION,
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vaso_amount DOUBLE PRECISION
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);
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DROP TABLE IF EXISTS epinephrine_dose;
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CREATE TABLE epinephrine_dose (
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icustay_id INTEGER,
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starttime TIMESTAMP(0),
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endtime TIMESTAMP(0),
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vaso_rate DOUBLE PRECISION,
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vaso_amount DOUBLE PRECISION
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);
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DROP TABLE IF EXISTS norepinephrine_dose;
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CREATE TABLE norepinephrine_dose (
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icustay_id INTEGER,
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starttime TIMESTAMP(0),
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endtime TIMESTAMP(0),
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vaso_rate DOUBLE PRECISION,
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vaso_amount DOUBLE PRECISION
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);
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-- 4. All-time pivots feeding hourly SOFA.
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DROP TABLE IF EXISTS blood_gas_arterial;
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CREATE TABLE blood_gas_arterial (
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subject_id INTEGER,
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hadm_id INTEGER,
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icustay_id INTEGER,
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charttime TIMESTAMP(0),
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specimen VARCHAR(200),
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specimen_pred VARCHAR(200),
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specimen_prob DOUBLE PRECISION,
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so2 DOUBLE PRECISION,
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spo2 DOUBLE PRECISION,
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po2 DOUBLE PRECISION,
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pco2 DOUBLE PRECISION,
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fio2_chartevents DOUBLE PRECISION,
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fio2 DOUBLE PRECISION,
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aado2 DOUBLE PRECISION,
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aado2_calc DOUBLE PRECISION,
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pao2fio2 DOUBLE PRECISION,
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ph DOUBLE PRECISION,
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baseexcess DOUBLE PRECISION,
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bicarbonate DOUBLE PRECISION,
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totalco2 DOUBLE PRECISION,
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hematocrit DOUBLE PRECISION,
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hemoglobin DOUBLE PRECISION,
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carboxyhemoglobin DOUBLE PRECISION,
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methemoglobin DOUBLE PRECISION,
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chloride DOUBLE PRECISION,
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calcium DOUBLE PRECISION,
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temperature DOUBLE PRECISION,
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potassium DOUBLE PRECISION,
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||
|
|
sodium DOUBLE PRECISION,
|
||
|
|
lactate DOUBLE PRECISION,
|
||
|
|
glucose DOUBLE PRECISION,
|
||
|
|
intubated DOUBLE PRECISION,
|
||
|
|
tidalvolume DOUBLE PRECISION,
|
||
|
|
ventilationrate DOUBLE PRECISION,
|
||
|
|
ventilator DOUBLE PRECISION,
|
||
|
|
peep DOUBLE PRECISION,
|
||
|
|
o2flow DOUBLE PRECISION,
|
||
|
|
requiredo2 DOUBLE PRECISION
|
||
|
|
);
|
||
|
|
|
||
|
|
DROP TABLE IF EXISTS gcs_all;
|
||
|
|
CREATE TABLE gcs_all (
|
||
|
|
icustay_id INTEGER,
|
||
|
|
charttime TIMESTAMP(0),
|
||
|
|
gcs DOUBLE PRECISION,
|
||
|
|
endotrachflag INTEGER
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5. Hourly SOFA pipeline. Each measurement class is materialised
|
||
|
|
-- into a narrow staging table keyed by (icustay_id, hr); these
|
||
|
|
-- are kept (not dropped) so each stage can be inspected with
|
||
|
|
-- EXPLAIN ANALYZE.
|
||
|
|
|
||
|
|
-- 5a. Hourly grid (one row per ICU hour per stay).
|
||
|
|
DROP TABLE IF EXISTS sofa_grid;
|
||
|
|
CREATE TABLE sofa_grid (
|
||
|
|
subject_id INTEGER,
|
||
|
|
hadm_id INTEGER,
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
starttime TIMESTAMP(0),
|
||
|
|
endtime TIMESTAMP(0)
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5b. MAP minimum within each hour.
|
||
|
|
DROP TABLE IF EXISTS sofa_vs;
|
||
|
|
CREATE TABLE sofa_vs (
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
meanbp_min DOUBLE PRECISION
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5c. GCS minimum within each hour (from gcs_all, which already has
|
||
|
|
-- the carry-forward and ET-trach=15 rules applied).
|
||
|
|
DROP TABLE IF EXISTS sofa_gcs;
|
||
|
|
CREATE TABLE sofa_gcs (
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
gcs_min DOUBLE PRECISION
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5d. Bilirubin maximum within each hour.
|
||
|
|
DROP TABLE IF EXISTS sofa_bili;
|
||
|
|
CREATE TABLE sofa_bili (
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
bilirubin_max DOUBLE PRECISION
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5e. Creatinine maximum within each hour.
|
||
|
|
DROP TABLE IF EXISTS sofa_cr;
|
||
|
|
CREATE TABLE sofa_cr (
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
creatinine_max DOUBLE PRECISION
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5f. Platelet minimum within each hour.
|
||
|
|
DROP TABLE IF EXISTS sofa_plt;
|
||
|
|
CREATE TABLE sofa_plt (
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
platelet_min DOUBLE PRECISION
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5g. PaO2/FiO2: split into vent / no-vent based on whether an
|
||
|
|
-- active ventilation episode covered the blood gas.
|
||
|
|
DROP TABLE IF EXISTS sofa_pf;
|
||
|
|
CREATE TABLE sofa_pf (
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
pao2fio2_novent DOUBLE PRECISION,
|
||
|
|
pao2fio2_vent DOUBLE PRECISION
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5h. Urine output rolling sum + count of distinct charted hours
|
||
|
|
-- within the past 24 h.
|
||
|
|
DROP TABLE IF EXISTS sofa_uo;
|
||
|
|
CREATE TABLE sofa_uo (
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
uo_24hr DOUBLE PRECISION,
|
||
|
|
uo_tm_24hr BIGINT
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5i. Vasopressor rate snapshot at the hour boundary.
|
||
|
|
DROP TABLE IF EXISTS sofa_vaso;
|
||
|
|
CREATE TABLE sofa_vaso (
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
rate_epinephrine DOUBLE PRECISION,
|
||
|
|
rate_norepinephrine DOUBLE PRECISION,
|
||
|
|
rate_dopamine DOUBLE PRECISION,
|
||
|
|
rate_dobutamine DOUBLE PRECISION
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5j. Wide assembly: grid LEFT JOINed onto every measurement table.
|
||
|
|
DROP TABLE IF EXISTS sofa_wide;
|
||
|
|
CREATE TABLE sofa_wide (
|
||
|
|
subject_id INTEGER,
|
||
|
|
hadm_id INTEGER,
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
starttime TIMESTAMP(0),
|
||
|
|
endtime TIMESTAMP(0),
|
||
|
|
meanbp_min DOUBLE PRECISION,
|
||
|
|
gcs_min DOUBLE PRECISION,
|
||
|
|
bilirubin_max DOUBLE PRECISION,
|
||
|
|
creatinine_max DOUBLE PRECISION,
|
||
|
|
platelet_min DOUBLE PRECISION,
|
||
|
|
pao2fio2_novent DOUBLE PRECISION,
|
||
|
|
pao2fio2_vent DOUBLE PRECISION,
|
||
|
|
uo_24hr DOUBLE PRECISION,
|
||
|
|
uo_tm_24hr BIGINT,
|
||
|
|
rate_epinephrine DOUBLE PRECISION,
|
||
|
|
rate_norepinephrine DOUBLE PRECISION,
|
||
|
|
rate_dopamine DOUBLE PRECISION,
|
||
|
|
rate_dobutamine DOUBLE PRECISION
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5k. Per-hour component scores (no rolling window yet).
|
||
|
|
DROP TABLE IF EXISTS sofa_components;
|
||
|
|
CREATE TABLE sofa_components (
|
||
|
|
subject_id INTEGER,
|
||
|
|
hadm_id INTEGER,
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
starttime TIMESTAMP(0),
|
||
|
|
endtime TIMESTAMP(0),
|
||
|
|
meanbp_min DOUBLE PRECISION,
|
||
|
|
gcs_min DOUBLE PRECISION,
|
||
|
|
bilirubin_max DOUBLE PRECISION,
|
||
|
|
creatinine_max DOUBLE PRECISION,
|
||
|
|
platelet_min DOUBLE PRECISION,
|
||
|
|
pao2fio2_novent DOUBLE PRECISION,
|
||
|
|
pao2fio2_vent DOUBLE PRECISION,
|
||
|
|
uo_24hr DOUBLE PRECISION,
|
||
|
|
uo_tm_24hr BIGINT,
|
||
|
|
rate_epinephrine DOUBLE PRECISION,
|
||
|
|
rate_norepinephrine DOUBLE PRECISION,
|
||
|
|
rate_dopamine DOUBLE PRECISION,
|
||
|
|
rate_dobutamine DOUBLE PRECISION,
|
||
|
|
respiration INTEGER,
|
||
|
|
coagulation INTEGER,
|
||
|
|
liver INTEGER,
|
||
|
|
cardiovascular INTEGER,
|
||
|
|
cns INTEGER,
|
||
|
|
renal INTEGER
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 5l. Final hourly SOFA: 24-hour rolling MAX per component, summed.
|
||
|
|
DROP TABLE IF EXISTS sofa_hourly;
|
||
|
|
CREATE TABLE sofa_hourly (
|
||
|
|
subject_id INTEGER,
|
||
|
|
hadm_id INTEGER,
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hr INTEGER,
|
||
|
|
starttime TIMESTAMP(0),
|
||
|
|
endtime TIMESTAMP(0),
|
||
|
|
respiration INTEGER,
|
||
|
|
coagulation INTEGER,
|
||
|
|
liver INTEGER,
|
||
|
|
cardiovascular INTEGER,
|
||
|
|
cns INTEGER,
|
||
|
|
renal INTEGER,
|
||
|
|
respiration_24hours INTEGER,
|
||
|
|
coagulation_24hours INTEGER,
|
||
|
|
liver_24hours INTEGER,
|
||
|
|
cardiovascular_24hours INTEGER,
|
||
|
|
cns_24hours INTEGER,
|
||
|
|
renal_24hours INTEGER,
|
||
|
|
sofa_24hours INTEGER
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 6. Suspicion of infection.
|
||
|
|
DROP TABLE IF EXISTS antibiotic;
|
||
|
|
CREATE TABLE antibiotic (
|
||
|
|
subject_id INTEGER,
|
||
|
|
hadm_id INTEGER,
|
||
|
|
icustay_id INTEGER,
|
||
|
|
antibiotic VARCHAR(255),
|
||
|
|
route VARCHAR(120),
|
||
|
|
-- MIMIC-III prescriptions has DATE-precision startdate / enddate
|
||
|
|
-- (stored as TIMESTAMP(0) but always at 00:00:00).
|
||
|
|
starttime TIMESTAMP(0),
|
||
|
|
stoptime TIMESTAMP(0)
|
||
|
|
);
|
||
|
|
|
||
|
|
DROP TABLE IF EXISTS suspicion_of_infection;
|
||
|
|
CREATE TABLE suspicion_of_infection (
|
||
|
|
subject_id INTEGER,
|
||
|
|
icustay_id INTEGER,
|
||
|
|
hadm_id INTEGER,
|
||
|
|
ab_id BIGINT,
|
||
|
|
antibiotic VARCHAR(255),
|
||
|
|
antibiotic_time TIMESTAMP,
|
||
|
|
suspected_infection INTEGER,
|
||
|
|
suspected_infection_time TIMESTAMP,
|
||
|
|
culture_time TIMESTAMP,
|
||
|
|
specimen VARCHAR(100),
|
||
|
|
positive_culture INTEGER
|
||
|
|
);
|
||
|
|
|
||
|
|
-- 7. Final Sepsis-3 onset table (one row per ICU stay).
|
||
|
|
DROP TABLE IF EXISTS sepsis3;
|
||
|
|
CREATE TABLE sepsis3 (
|
||
|
|
subject_id INTEGER,
|
||
|
|
icustay_id INTEGER,
|
||
|
|
antibiotic_time TIMESTAMP,
|
||
|
|
culture_time TIMESTAMP,
|
||
|
|
suspected_infection_time TIMESTAMP,
|
||
|
|
sofa_time TIMESTAMP(0),
|
||
|
|
sofa_score INTEGER,
|
||
|
|
respiration INTEGER,
|
||
|
|
coagulation INTEGER,
|
||
|
|
liver INTEGER,
|
||
|
|
cardiovascular INTEGER,
|
||
|
|
cns INTEGER,
|
||
|
|
renal INTEGER,
|
||
|
|
sepsis3 BOOLEAN
|
||
|
|
);
|