initial

sql/fluid_balance/urine_output.sql

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+-- THIS SCRIPT IS AUTOMATICALLY GENERATED. DO NOT EDIT IT DIRECTLY.
+DROP TABLE IF EXISTS urine_output; CREATE TABLE urine_output AS 
+-- First we drop the table if it exists
+select oe.icustay_id, oe.charttime
+, SUM(
+    -- we consider input of GU irrigant as a negative volume
+    case when oe.itemid = 227488 then -1*value
+    else value end
+  ) as value
+from outputevents oe
+where oe.itemid in
+(
+  -- these are the most frequently occurring urine output observations in CareVue
+  40055, -- "Urine Out Foley"
+  43175, -- "Urine ."
+  40069, -- "Urine Out Void"
+  40094, -- "Urine Out Condom Cath"
+  40715, -- "Urine Out Suprapubic"
+  40473, -- "Urine Out IleoConduit"
+  40085, -- "Urine Out Incontinent"
+  40057, -- "Urine Out Rt Nephrostomy"
+  40056, -- "Urine Out Lt Nephrostomy"
+  40405, -- "Urine Out Other"
+  40428, -- "Urine Out Straight Cath"
+  40086,--	Urine Out Incontinent
+  40096, -- "Urine Out Ureteral Stent #1"
+  40651, -- "Urine Out Ureteral Stent #2"
+
+  -- these are the most frequently occurring urine output observations in MetaVision
+  226559, -- "Foley"
+  226560, -- "Void"
+  226561, -- "Condom Cath"
+  226584, -- "Ileoconduit"
+  226563, -- "Suprapubic"
+  226564, -- "R Nephrostomy"
+  226565, -- "L Nephrostomy"
+  226567, --	Straight Cath
+  226557, -- R Ureteral Stent
+  226558, -- L Ureteral Stent
+  227488, -- GU Irrigant Volume In
+  227489  -- GU Irrigant/Urine Volume Out
+)
+and oe.value < 5000 -- sanity check on urine value
+and oe.icustay_id is not null
+group by icustay_id, charttime;