49 lines
1.7 KiB
PL/PgSQL
49 lines
1.7 KiB
PL/PgSQL
-- ------------------------------------------------------------------
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-- Build the SAPS-II severity score on a vanilla PostgreSQL MIMIC-III v1.3 DB.
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--
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-- Usage (assuming you have already restored the MIMIC-III dump into a
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-- database called `mimic` and have the base tables in the `mimiciii` schema):
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--
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-- psql -d mimic -v ON_ERROR_STOP=1 \
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-- -c 'SET search_path TO mimiciii, public;' \
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-- -f sql/build_sapsii.sql
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--
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-- Resulting tables created in the current search_path:
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-- urine_output (not used by SAPS-II directly,
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-- included for completeness)
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-- ventilation_classification
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-- ventilation_durations
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-- blood_gas_first_day
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-- blood_gas_first_day_arterial
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-- gcs_first_day
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-- labs_first_day
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-- urine_output_first_day
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-- vitals_first_day
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-- sapsii <-- final score table
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-- ------------------------------------------------------------------
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\set ON_ERROR_STOP on
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-- 0. PL/pgSQL shims for BigQuery-style DATETIME_DIFF / DATETIME_ADD / DATETIME_SUB
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\i postgres-functions.sql
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-- 1. Optional helper view (not required by SAPS-II, but useful and harmless)
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\i fluid_balance/urine_output.sql
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-- 2. Ventilation: classification first, then durations
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\i durations/ventilation_classification.sql
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\i durations/ventilation_durations.sql
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-- 3. First-day derived views (blood_gas_first_day must precede the arterial one)
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\i firstday/blood_gas_first_day.sql
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\i firstday/blood_gas_first_day_arterial.sql
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\i firstday/gcs_first_day.sql
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\i firstday/labs_first_day.sql
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\i firstday/urine_output_first_day.sql
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\i firstday/vitals_first_day.sql
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-- 4. The score itself
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\i severityscores/sapsii.sql
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\echo 'SAPS-II build complete. Query results with: SELECT * FROM sapsii LIMIT 10;'
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